Bioinformatics has published my latest paper via advance access. The copy which I link to below is my final submission to the Journal. The final published version will be slightly different because it will have been edited by the journals for publication in the actual journal.
Cartwright RA (2007) Ngila: Global Pairwise Alignments with Logarithmic and Affine Gap Costs. Bioinformatics. advance access 3/25/07; doi: 10.1093/bioinformatics/btm095 [link]
Abstract:
Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.
Availability: Portable source code for Ngila can be downloaded from its development website, http://scit.us/projects/ngila/. It compiles on most operating systems.
Supplementary Information: Appendices
Sweet! I’ve just downloaded the paper; I’m going to have a look over it and the Ngila source code over the next few days.
Cool. Let me know if you want a compiled version. I can make that happen.
That would be cool, actually – I want to compare what your software gets with some stuff I’ve played around with before.
I don’t know if you can pull my email off my comment, but if not, it’s accademia_dei_lincei “at” yahoo.co.uk.
Update