Ngila 1.3 Released

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It has been a long time coming, but I have finally released Ngila 1.3. This version fixes a few bugs and includes many new features.

  • Use CMake for compilation and installation
  • New scaling option enabled by default (identical sequences default to cost of 0)
  • Protein evolutionary models: aazeta and aageo
  • Fasta and Phylip format output support
  • Clustal and Phylip format input support
  • Report sequence identity measure
  • Matrix output formats for distance measures
  • Look for “ngilarc” file in the home directory.
  • New separator option
  • New const-align option
  • Replace arg-file option with ngilarc option.
  • Use custom zeta function if GSL not found.
  • Optimize size of travel table.
  • Ordering of –pairs-all fixed
  • bug fix for output of large alignments >10kb
  • minor bug fix for geo model

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This page contains a single entry by Reed A. Cartwright published on December 8, 2010 11:15 PM.

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